OTU / denoising pipeline
Generating an OTU table
Commands which support generating
OTU tables understand the following options.
The most commonly used commands are otutab and
Tab-separated text file which maps reads to OTUs.
There is one read per line with two fields: the read label and the OTU identifier.
-otutabout filename QIIME classic tabbed
BIOM v1.0 format (JSON). The
utility can be used to convert to
BIOM v2.1 format (HDF5).
Mothur "shared" file.