OTU table output files
OTU / denoising pipeline
Generating an OTU table
Commands which support generating OTU tables understand the following options. The most commonly used commands are otutab and closed_ref.
Tab-separated text file which maps reads to OTUs.
There is one read per line with two fields: the read label and the OTU identifier.
QIIME classic tabbed text format.
BIOM v1.0 format (JSON). The biom utility can be used to convert to BIOM v2.1 format (HDF5).
Mothur "shared" file.