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USEARCH v11

Clustering

  UPARSE (OTU clustering for next-gen amplicon reads)
  UCLUST, general-purpose sequence clustering
  UCLUST sort order
  Abundance sorting
  Agglomerative clustering (single, complete and average linkage)
  Connected components (single-linkage clustering)
  Can UCLUST cluster metagenomics contigs?
  Clustering sequences using local alignment