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Command categories

  Sequence alignment commands
  Chimera detection and filtering
  Sequence, tree and graph-based clustering
  Distance matrices
  Commands for diversity analysis
  Commands for reads in FASTQ format
  Commands for sequences in FASTx format (FASTA and FASTQ)
  Machine learning and finding informative OTUs
  Miscellaneous commands
  Commands for OTU analysis and denoising
  OTU table commands
  Next-generation reads
  Sequence database search
  Taxonomy commands
  Tree commands
  Labels and annotations