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05-Oct-2017
PeerJ paper
shows low accuracy of closed- and open-ref. QIIME OTUs.
22-Sep-2017
New paper
OTUs should be 99% full-length, 100% for V4.
03-Jun-2017
USEARCH v10.0 posted.
What's new
.
11-Apr-2017
UNBIAS paper
:
16S read abundance does not correlate with species abundance!
24-Nov-2016
UPARSE tutorial video
posted on YouTube. Make OTUs from MiSeq reads.
USEARCH home
UPARSE home
OTUs and denoising
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Data analysis service
Getting started
What's new in v10
Installation
Command line
Tutorials and lecture slides
Papers and citing USEARCH
Commands
All commands
Algorithms
Commands by category
search
,
clustering
,
fasta/q files
trees & distance matrices
OTU commands
Command-line options
Support
Technical support
Known bugs
Marker gene metagenomics (16S, ITS...)
OTU / denoising analysis
Quality control for OTUs
Example scripts with test data
Diversity and taxonomy analysis
OTU tables
Topics in sequence analysis
OTU analysis
,
clustering methods
,
taxonomy
,
diversity analysis
,
next-gen reads
Old manuals
Version 9.2
Version 8.1
Version 7
Version 6