Pipeline example: minimal, unpaired
OTU / denoising
Example pipelines with test
This example shows the minimum commands you
need to get from fixed-length unpaired reads to OTU sequences. In practice,
you'll probably need to do more read
preparation. The data has 4,259 reads of a mock community which generate
~21 OTUs. You need to set the environment
variable $usearch to a valid command name for usearch, e.g. the full
path name of the binary file.
Download commands and data
Reads: right-click on
and click Save As.
Bash script: select all text below (ctrl+A) and
copy/paste into a text editor, or right-click on
ex_min.bash and click Save As.