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Recommended protocols for OTU / denoising analysis

Online tutorials with data and scripts for download

Click boxes for documentation.

Example pipelines with test data

Read preparation

OTU clustering / denoising

Construct OTU table

Quality control

Diversity and taxonomy analysis

Reseek Structure alignment and search
More accurate than TM-align,
DALI and Foldseek Open-source USEARCH Fast sequence search, clustering, amplicon OTU and ASV analysis MUSCLE v5 State of the art MSA

Recent updates

🔎 Reseek structure search
AFDB, BFVD & PDB >

📝 Preprint shows structure
E-values wrong by orders of magnitude >

🧬 Assembly and search for entire SRA >

🚀 Open-source USEARCH >

🎯 Looking for new projects / collaborations >

1sco

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