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24-Nov-2016 UPARSE tutorial video posted on YouTube. Make OTUs from MiSeq reads.

19-Nov-2016 USEARCH v9.1 posted. See what's new.

19-Nov-2016 UNCROSS paper posted. 2% of Illumina reads are assigned to wrong sample!

16-Oct-2016 UNOISE paper posted.

14-Sep-2016 UCHIME2 paper posted.

14-Sep-2016 SINTAX paper posted.

USEARCH
 
USEARCH has been cited by
3,882 papers
Google scholar
Last updated 10 Dec 2016
 
 
 
 
 
 
 

 

30,259
registered users

64-bit users
Joint Genome Institute
MBL, Woods Hole
Cornell Univ.
CNRS (France)
La Jolla Institute
Ag. Research (NZ)
Broad Institute
Nestle
LANL
UC Davis
UC Berkeley
NCBI
NIH
Monsanto
Caltech
Pacific Biosystems
and many more.
 
High-throughput search and clustering
USEARCH is a unique sequence analysis tool with thousands of users world-wide. USEARCH offers search and clustering algorithms that are often orders of magnitude faster than BLAST.
 
Improved productivity and insights
USEARCH combines many different algorithms into a single package with outstanding documentation and support. This cuts your learning curve, reduces the number of steps you need to take for a given task, and slashes compute times. USEARCH will encourage you to explore your data, enabling new insights and suggesting new analyses that you might not have tried with slower tools.
 
Free for most users
Licenses to use 32-bit USEARCH are offered at no charge for all users, including commercial. You can download the 32-bit version here.