This version is obsolete. Current
version here.
Download and use of MUSCLE implies acceptance of the License
Agreement.
Version 3.0 posted January 2004
Install files for Linux (.tar.gz format)
Install files for Windows NT/2000/XP (ZIP format)
Source code (.tar.gz format)
Some browsers open the PDF file and the Web page
manuals instead of starting a download. If this
happens to you, try right-clicking on the link and choosing an option
named "Save Target As..." or similar.
The Linux install and source code downloads are named *.tar.gz. Some
browsers decompress (gunzip) such files but fail to remove the .gz
extension on the file name. If you have trouble with gunzip, try
renaming the file to *.tar.
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