MUSCLE downloads from drive5.com
version 3.8.31 posted 1st May 2010
 

Documentation
Manual (PDF).
Manual (Web page).

Source code
 C++ source (all platforms)

Mailing list
Sign up for email notifications of updates and bug fixes.  

Files are in tarball (.tar.gz) format. To extract, use:

tar -zxvf filename
 
Operating system Processor Bits Executable file
Linux Intel i86 32 muscle3.8.31_i86linux32.tar.gz
Linux Intel i86 64 muscle3.8.31_i86linux64.tar.gz
Mac OSX (Darwin) Intel i86 32 muscle3.8.31_i86darwin32.tar.gz
Mac OSX (Darwin) Intel i86 64 muscle3.8.31_i86darwin64.tar.gz
Mac  PPC 64 muscle3.8.31_macppc.tar.gz
Windows Intel i86 32 muscle3.8.31_i86win32.exe
Windows/Cygwin Intel i86 32 muscle3.8.31_i86cygwin32.exe

Older versions

Fast version of MUSCLE for i86 Linux

Joel Hedlund at NSC in Sweden has re-compiled MUSCLE using the Intel compiler, and is generously making this binary available to other MUSCLE users. Joel reports that this binary for i86 Linux is faster than my binaries, which are compiled with gcc.

You can download Joel's binary by following this link to the NSC MUSCLE page. Please note that I have not tested this program and cannot provide support for issues that are specific to this build.