OTU analysis benchmarks and papers
|
Algorithm |
Benchmark results | Paper |
| Paired read merging (assembly) | Paired read assembler validation |
Edgar & Flyvbjerg (2015) Error filtering, pair assembly and
error correction for next-generation sequencing reads. |
| Quality filtering by expected errors. | Read quality filtering validation |
Edgar & Flyvbjerg (2015) Error filtering, pair assembly and
error correction for next-generation sequencing reads. |
| Taxonomy prediction | Taxonomy benchmarks | (Paper in
submission). |
| OTU clustering with simultaneous chimera filtering. | OTU benchmarks |
Edgar (2013)
UPARSE: highly accurate OTU sequences from microbial amplicon
reads. |
|
Stand-alone chimera filtering |
Chimera benchmarks |
Edgar et
al. (2011) UCHIME improves sensitivity and speed of
chimera detection. |