Tutorials and sample data
Let me know if your data is different from these examples, I'll be glad to help you figure out how to modify the scripts.
| Tutorial | Marker | Reads | Samples |
|
Misop Part 1: UPARSE pipeline (reads to OTU table) Part 2: Mock community analysis (stringent) Part 3: Mock community analysis (less stringent) Part 4: Read quality and error rate analysis |
16S |
MiSeq 2x250 PE |
Mouse feces and mock community. |
|
HMP Part 1. UPARSE pipeline (reads to OTU table) Part 2. Implementing the pipeline script |
16S |
454 Titanium |
Human Microbiome Project human body sites. |
|
Misits Part1. UPARSE pipeline (reads to OTU table) |
ITS2 |
MiSeq 2x300 PE |
Fungi extracted from pine needles. |