| Field |
|
Description |
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n=k; |
|
Number of segments in the model. If n>1, the model is
chimeric. If n=?, the model is too far diverged from the query sequence for
parsimony to be reliable. The divergence is measured using the divqm field (see
below). The ‑uparse_annot_maxdivqm option specifies the maximum allowed
divergence; default is 1.0.
|
|
diffsqm=d; |
|
Number of differences between the query sequence and
model. A difference is a substitution or indel (one gap symbol). If diffsqm=0,
this indicates the model is identical to the query. If diffsqm>0, this is
interpreted as due to point errors (sequencing error or PCR copying mistakes).
|
|
dqt=d; |
|
Divergence between query and top hit in the database as a
percentage, calculated as 100% - PctId(Query, TopHit). Sequence identity is calculated from a global
alignment.
|
|
dqm=d; |
|
Divergence between query and model, as a percentage,
calculated as 100% - PctId(Query, Model).
|
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top=label; |
|
Label of database top hit.
|
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parents=string; |
|
Included only if the model is chimeric. The string
specifies the segments used to construct the model. Each segment is specified as
label(from-to), where from and to are the
1-based coordinates.
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