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Word length
The -wordlength option is an
index parameter
that sets the length of the k-mers that are indexed. In other words, it is the k in k-mer.
Reseek
Structure alignment and search
More accurate than TM-align,
DALI and Foldseek
Open-source USEARCH
Fast sequence search, clustering, amplicon OTU and ASV analysis
MUSCLE v5
State of the art MSA
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