File format conversions
This table summarizes file format conversion commands in USEARCH. If you need support for other formats, let me know .
| From format | To format | Command-line |
| FASTQ | FASTA | usearch - fastq_filte r in.fastq -fastaout out.fasta |
| SAM | human-readable alignments | usearch - sam_filter in.sam -alnout out.aln |
| SAM | BLAST -outfmt 6 | usearch - sam_filter in.sam -blast6out out.b6 |
| UDB | FASTA | usearch - udb2fasta in.udb -fastaout out.fasta |
