USEARCH documentation
USEARCH features and
performance
Features.
Performance.
OTU clustering
The otupipe
script is provided for high-throughput, high-accuracy OTU clustering
based on USEARCH.
Papers
Edgar,R.C. (2010), Search and
clustering orders of magnitude faster than BLAST, Bioinformatics.
doi:
10.1093/bioinformatics/btq461
Edgar,RC, Haas,BJ, Clemente,JC, Quince,C, Knight,R (2011) UCHIME improves sensitivity and speed of chimera detection, Bioinformatics doi: 10.1093/bioinformatics/btr381.
Manuals
How
to install and use my command-line programs.
Version
5.1 USEARCH manual (PDF).
Version
5.0 USEARCH manual (PDF).
Version 5.0 UCHIME manual
(PDF).
OTU clustering
See otupipe
home page.
New
features and bug reports
Change logs.
Other
Comments
on comparing CD-HIT and the UCLUST algorithm in USEARCH.
