Protein clustering benchmark (ORTHO)

USEARCH performance home page
ORTHO methods and references

ORTHO results


Threshold

Time (secs.)
      
USEARCH                CD-HIT

Cluster size
      
USEARCH                CD-HIT

50%

 240

59,282

12.7

11.4

60%

 203

 7,707

10.1

8.0

70%

 181

 11,899

7.5

5.7

80%

 215

 8,799

5.1

4.0

90%

 413

 344

3.0

2.6