| USEARCH manual > commands > allpairs_global |
| allpairs_global command |
Aligns all pairs of sequences in a FASTA file using global alignment. Alignments are constructed and reported unconditionally; accept and termination conditions are not supported. Multithreading is not supported, though it could be implemented. See also: Example usearch -allpairs_global pairs.fasta
-alnout results.aln |