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Example pipelines with test data

See also
 
OTU / denoising pipeline
  Tutorials with data, scripts, and excercises with solutions (new Aug 2017)

Example   Description
Minimal, unpaired   OTUs from unpaired Illumina reads.
Minimal, paired   OTUs and ZOTUs from overlapping paired reads.
MiSeq 2x250 16S V4   OTUs and ZOTUs, OTU table, diversity analysis and taxonomy (16S).
MiSeq 2x300 ITS   OTUs and ZOTUs, OTU table, diversity analysis and taxonomy (ITS).
HMP 454 16S V5-V3   OTUs, OTU table, diversity analysis and taxonomy from 454 reads.