This is a quality scoring program that compares two multiple sequence
alignments: an alignment to be evaluated (the "test"
alignment) and a second alignment that is believed to be correct (the
"reference" alignment). The program outputs the following
- The PREFAB Q score (aka the Balibase SPS score or the
- The Modeler score
- The Cline et al. shift score
- The Balibase TC (total column) score
Click here to download source code.