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PILER-CR: detection of CRISPR repeats in bacterial genomes
See here for PILER-CR.
 
About PILER
PILER is public domain software for analyzing repetitive DNA found in genome sequences.

Credits
The PILER algorithm was developed by Bob Edgar and Gene Myers.

Download
Click here to download PILER source code only, 34 kb file, tarball (.tar.gz) format. 

Click here to download Mac OSX source and binaries for PALS and PILER.

You will also need MUSCLE and PALS.

Documentation
 Manual as a PDF file
Manual as a web page

Citing PILER
Please cite this paper:

R.C. Edgar and E.W. Myers, PILER: identification and classification of genomic repeats.
Bioinformatics. 2005 Jun 1;21 Suppl 1:i152-i158

News and updates
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